SPIM workflow manager for HPC

Synchronization Manager Component for Workflow Management Systems

SLA-aware Interactive Workflow Assistant for HPC Parameter Sweeping Experiments

A common workflow in science and engineering is to (i) setup and deploy large experiments with tasks comprising an application and multiple parameter values; (ii) generate intermediate results; (iii) analyze them; and (iv) reprioritize the tasks. These steps are repeated until the desired goal is achieved, which can be the evaluation/simulation of complex systems or model calibration. Due to ti...

Bidding policies for market-based HPC workflow scheduling

This paper considers the scheduling of jobs on distributed, heterogeneous High Performance Computing (HPC) clusters. Market-based approaches are known to be efficient for allocating limited resources to those that are most prepared to pay. This context is applicable to an HPC or cloud computing scenario where the platform is overloaded. In this paper, jobs are composed of dependent tasks. Each ...

Bioimage informatics An automated workflow for parallel processing of large multiview SPIM recordings

Summary: Selective Plane Illumination Microscopy (SPIM) allows to image developing organisms in 3D at unprecedented temporal resolution over long periods of time. The resulting massive amounts of raw image data requires extensive processing interactively via dedicated graphical user interface (GUI) applications. The consecutive processing steps can be easily automated and the individual time po...

An automated workflow for parallel processing of large multiview SPIM recordings

UNLABELLED Selective Plane Illumination Microscopy (SPIM) allows to image developing organisms in 3D at unprecedented temporal resolution over long periods of time. The resulting massive amounts of raw image data requires extensive processing interactively via dedicated graphical user interface (GUI) applications. The consecutive processing steps can be easily automated and the individual time ...